Transcript: RNASEH1-AS1:4

Basic information

LNCipedia transcript ID: RNASEH1-AS1:4 
LNCipedia gene ID: RNASEH1-AS1
Location (hg38): chr2:3558432-3561872
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1157 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004673; NONHSAT068734
Alternative gene names: XLOC_001323; linc-RPS7-1; ; LOC100506054


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6439 non-coding 
CPAT coding probability 23.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNASEH1-AS1:4 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS7-1:1
3.1 lnc-RPS7-1:1
4.0 RNASEH1-AS1:4
4.1 RNASEH1-AS1:4
5.0 RNASEH1-AS1:4
5.1 RNASEH1-AS1:4
5.2 RNASEH1-AS1:4