Transcript: RNASEH1-AS1:3

Basic information

LNCipedia transcript ID: RNASEH1-AS1:3 
LNCipedia gene ID: RNASEH1-AS1
RefSeq ID: NR_038431
Location (hg38): chr2:3558387-3561750
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1046 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT068733; NR_038431; NR_038431.1
Alternative gene names: ; LOC100506054; RNASEH1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6439 non-coding 
CPAT coding probability 7.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNASEH1-AS1:3 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS7-1:13
4.0 RNASEH1-AS1:3
4.1 RNASEH1-AS1:3
5.0 RNASEH1-AS1:3
5.1 RNASEH1-AS1:3
5.2 RNASEH1-AS1:3