Transcript: RNASEH1-AS1:27

Basic information

LNCipedia transcript ID: RNASEH1-AS1:27 
LNCipedia gene ID: RNASEH1-AS1
Location (hg38): chr2:3558686-3562431
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1462 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234171.1|FTMT20700058280.1
Alternative gene names: LOC100506054


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.1038 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNASEH1-AS1:27 no no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 RNASEH1-AS1:27
5.0 RNASEH1-AS1:27
5.1 RNASEH1-AS1:27
5.2 RNASEH1-AS1:27