Transcript: RNASEH1-AS1:23

Basic information

LNCipedia transcript ID: RNASEH1-AS1:23 
LNCipedia gene ID: RNASEH1-AS1
Location (hg38): chr2:3558471-3571313
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 10748 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234171.1|HBMT00000757866.1
Alternative gene names: LOC100506054


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 206.6507 coding 
CPAT coding probability 17.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RNASEH1-AS1:23 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 RNASEH1-AS1:23
5.0 RNASEH1-AS1:23
5.1 RNASEH1-AS1:23
5.2 RNASEH1-AS1:23