Transcript: RNASEH1-AS1:10

Basic information

LNCipedia transcript ID: RNASEH1-AS1:10 
LNCipedia gene ID: RNASEH1-AS1
Location (hg38): chr2:3558468-3561464
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 961 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA723:2
Alternative gene names: ; LOC100506054


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.6439 non-coding 
CPAT coding probability 8.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNASEH1-AS1:10 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 RNASEH1-AS1:10
4.1 RNASEH1-AS1:10
5.0 RNASEH1-AS1:10
5.1 RNASEH1-AS1:10
5.2 RNASEH1-AS1:10