Transcript: RHPN1-AS1:2

Basic information

LNCipedia transcript ID: RHPN1-AS1:2 
LNCipedia gene ID: RHPN1-AS1
RefSeq ID: NR_026785
Location (hg38): chr8:143366623-143368635
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2013 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT129571; NR_026785; NR_026785.1
Alternative gene names: MGC3113; RHPN1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.9867 non-coding 
CPAT coding probability 4.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RHPN1-AS1:2 no no no no

Available literature

  1. Lu (2017), The Long Non-Coding RNA RHPN1-AS1 Promotes Uveal Melanoma Progression., Int J Mol Sci
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOP1MT-1:2
4.0 RHPN1-AS1:2
4.1 RHPN1-AS1:2
5.0 RHPN1-AS1:2
5.1 RHPN1-AS1:2
5.2 RHPN1-AS1:2