Transcript: RGPD4-AS1:9

Basic information

LNCipedia transcript ID: RGPD4-AS1:9 
LNCipedia gene ID: RGPD4-AS1
Location (hg38): chr2:107823064-107826127
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1581 bp
Exons: 2
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014
Alternative transcript names: TCONS_00002668; NONHSAT073076; NR_024439
Alternative gene names: XLOC_002254; linc-ST6GAL2-6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.2122 non-coding 
CPAT coding probability 5.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RGPD4-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST6GAL2-5:2
3.1 lnc-ST6GAL2-5:3
4.0 RGPD4-AS1:9
4.1 RGPD4-AS1:9
5.0 RGPD4-AS1:9
5.1 RGPD4-AS1:9
5.2 RGPD4-AS1:9