Transcript: RGMB-AS1:3

Basic information

LNCipedia transcript ID: RGMB-AS1:3 
HGNC Gene Symbol: RGMB-AS1    
HGNC Full Gene Name: RGMB antisense RNA 1
Ensembl Gene ID: ENSG00000246763
Ensembl Transcript ID: ENST00000505677
Location (hg38): chr5:98770950-98773469
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 397 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505677.1; CTC-463N11.3-004; OTTHUMT00000370293.1; NONHSAT147351
Alternative gene names: ENSG00000246763.2; CTC-463N11.3; OTTHUMG00000162743.1; RGMB-AS1; ENSG00000246763.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.124 non-coding 
CPAT coding probability 5.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RGMB-AS1:3 no no no no

Available literature

  1. Li (2016), Long Noncoding RNA RGMB-AS1 Indicates a Poor Prognosis and Modulates Cell Proliferation, Migration and Invasion in Lung Adenocarcinoma., PLoS ONE
  2. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  3. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHD1-1:1
4.0 RGMB-AS1:3
4.1 RGMB-AS1:3
5.0 RGMB-AS1:3
5.1 RGMB-AS1:3
5.2 RGMB-AS1:3