Transcript: RFX3-AS1:5

Basic information

LNCipedia transcript ID: RFX3-AS1:5 
HGNC Gene Symbol: RFX3-AS1    
HGNC Full Gene Name: RFX3 antisense RNA 1
Ensembl Gene ID: ENSG00000232104
Ensembl Transcript ID: ENST00000457566
Location (hg38): chr9:3668086-3671646
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 496 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457566; ENST00000457566.1; RP11-509J21.1-002; OTTHUMT00000051551.1; NONHSAT130031
Alternative gene names: ENSG00000232104; RP11-509J21.1; ENSG00000232104.1; OTTHUMG00000019457.1; ENSG00000232104.2; ENSG00000232104.3; RFX3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.6796 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFX3-AS1:5 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNV2-3:2
3.1 lnc-KCNV2-3:2
4.0 RFX3-AS1:5
4.1 RFX3-AS1:5
5.0 RFX3-AS1:5
5.1 RFX3-AS1:5
5.2 RFX3-AS1:5