Transcript: RFX3-AS1:3

Basic information

LNCipedia transcript ID: RFX3-AS1:3 
HGNC Gene Symbol: RFX3-AS1    
HGNC Full Gene Name: RFX3 antisense RNA 1
Ensembl Gene ID: ENSG00000232104
Ensembl Transcript ID: ENST00000423112
Location (hg38): chr9:3526723-3671634
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT130022; ENST00000423112.2
Alternative gene names: ENSG00000232104.2; RP11-509J21.1; ENSG00000232104.3; RFX3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.7909 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFX3-AS1:3 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNV2-3:4
4.0 RFX3-AS1:3
4.1 RFX3-AS1:3
5.0 RFX3-AS1:3
5.1 RFX3-AS1:3
5.2 RFX3-AS1:3