Transcript: RFX3-AS1:2

Basic information

LNCipedia transcript ID: RFX3-AS1:2 
LNCipedia gene ID: RFX3-AS1
Location (hg38): chr9:3526723-3671624
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 531 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000423112; ENST00000423112.1; RP11-509J21.1-001; OTTHUMT00000051550.1; NONHSAT130023
Alternative gene names: ENSG00000232104; RP11-509J21.1; ENSG00000232104.1; OTTHUMG00000019457.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.7909 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFX3-AS1:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNV2-3:1
3.1 lnc-KCNV2-3:1
4.0 RFX3-AS1:2
4.1 RFX3-AS1:2
5.0 RFX3-AS1:2
5.1 RFX3-AS1:2
5.2 RFX3-AS1:2