Transcript: RASGRF2-AS1:5

Basic information

LNCipedia transcript ID: RASGRF2-AS1:5 
LNCipedia gene ID: RASGRF2-AS1
Location (hg38): chr5:80947732-80951471
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 364 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010389; NONHSAT102424
Alternative gene names: XLOC_004907; linc-MTRNR2L2-1; ; CTC-459I6.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.0891 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RASGRF2-AS1:5 no no no no

Available literature

  1. Singh (2016), Investigation of novel LPS-induced differentially expressed long non-coding RNAs in endothelial cells., Mol. Cell. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHFR-2:3
3.1 lnc-DHFR-2:4
4.0 RASGRF2-AS1:5
4.1 RASGRF2-AS1:5
5.0 RASGRF2-AS1:5
5.1 RASGRF2-AS1:5
5.2 RASGRF2-AS1:5