Transcript: RASGRF2-AS1:4

Basic information

LNCipedia transcript ID: RASGRF2-AS1:4 
HGNC Gene Symbol: RASGRF2-AS1    
HGNC Full Gene Name: RASGRF2 antisense RNA 1
Ensembl Gene ID: ENSG00000251450
Ensembl Transcript ID: ENST00000505107
Location (hg38): chr5:80951129-80952980
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 665 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009714; ENST00000505107.1; CTC-459I6.1-002; OTTHUMT00000369470.1; NONHSAT102428
Alternative gene names: XLOC_004907; linc-MTRNR2L2-1; ENSG00000251450.1; CTC-459I6.1; OTTHUMG00000162539.1; RASGRF2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.1281 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RASGRF2-AS1:4 no no no no

Available literature

  1. Singh (2016), Investigation of novel LPS-induced differentially expressed long non-coding RNAs in endothelial cells., Mol. Cell. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHFR-2:2
3.1 lnc-DHFR-2:3
4.0 RASGRF2-AS1:4
4.1 RASGRF2-AS1:4
5.0 RASGRF2-AS1:4
5.1 RASGRF2-AS1:4
5.2 RASGRF2-AS1:4