Transcript: RALY-AS1:3

Basic information

LNCipedia transcript ID: RALY-AS1:3 
LNCipedia gene ID: RALY-AS1
Location (hg38): chr20:33992511-33994357
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 548 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000419662; ENST00000419662.1; RP5-1125A11.1-002; OTTHUMT00000078747.1; NONHSAT079418
Alternative gene names: ENSG00000228265; RP5-1125A11.1; ENSG00000228265.1; OTTHUMG00000032279.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.7769 non-coding 
CPAT coding probability 7.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RALY-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2S2-3:1
3.1 lnc-EIF2S2-3:1
4.0 RALY-AS1:3
4.1 RALY-AS1:3
5.0 RALY-AS1:3
5.1 RALY-AS1:3
5.2 RALY-AS1:3