Transcript: RAB30-AS1:20

Basic information

LNCipedia transcript ID: RAB30-AS1:20 
LNCipedia gene ID: RAB30-AS1
Location (hg38): chr11:83072152-83073559
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 367 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019415; NONHSAT023377
Alternative gene names: XLOC_009233; linc-PCF11-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -264.8544 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.630435674
seqAAMINKGVRRNRCWKVTKVERDVALALQSLSH
covF1Prop0.178571429

In stringent set: no

Locus conservation

Locus conservation?
RAB30-AS1:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCF11-1:14
3.1 lnc-PCF11-1:14
4.0 RAB30-AS1:20
4.1 RAB30-AS1:20
5.0 RAB30-AS1:20
5.1 RAB30-AS1:20
5.2 RAB30-AS1:20