Transcript: RAB30-AS1:17

Basic information

LNCipedia transcript ID: RAB30-AS1:17 
LNCipedia gene ID: RAB30-AS1
Location (hg38): chr11:83072129-83091275
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 301 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019413; NONHSAT023375
Alternative gene names: XLOC_009233; linc-PCF11-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -264.8544 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.178571429
orfFrame6.630435674
seqAAMINKGVRRNRCWKVTKVERDVALALQSLSH

In stringent set: no

Locus conservation

Locus conservation?
RAB30-AS1:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCF11-1:12
3.1 lnc-PCF11-1:12
4.0 RAB30-AS1:17
4.1 RAB30-AS1:17
5.0 RAB30-AS1:17
5.1 RAB30-AS1:17
5.2 RAB30-AS1:17