Transcript: PWRN4:3

Basic information

LNCipedia transcript ID: PWRN4:3 
HGNC Gene Symbol: PWRN4    
HGNC Full Gene Name: Prader-Willi region non-protein coding RNA 4
Ensembl Gene ID: ENSG00000260232
Ensembl Transcript ID: ENST00000563016
Location (hg38): chr15:23975172-24003435
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 420 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563016.1; RP11-484P15.2-001; OTTHUMT00000421168.1; NONHSAT040852
Alternative gene names: ENSG00000260232.1; RP11-484P15.2; OTTHUMG00000172887.1; PWRN4; LINC01084


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.1219 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PWRN4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MKRN3-3:2
4.0 PWRN4:3
4.1 PWRN4:3
5.0 PWRN4:3
5.1 PWRN4:3
5.2 PWRN4:3