Transcript: PWRN2:4

Basic information

LNCipedia transcript ID: PWRN2:4 
HGNC Gene Symbol: PWRN2    
HGNC Full Gene Name: Prader-Willi region non-protein coding RNA 2
RefSeq ID: NR_026647
Location (hg38): chr15:24164779-24169906
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5128 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT040875; NR_026647; NR_026647.1
Alternative gene names: NCRNA00199; PWRN2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 36.9257 non-coding 
CPAT coding probability 2.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PWRN2:4 no no no no

Available literature

  1. Huang (2016), Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients., J. Assist. Reprod. Genet.
  2. Buiting (2007), C15orf2 and a novel noncoding transcript from the Prader-Willi/Angelman syndrome region show monoallelic expression in fetal brain., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDN-1:7
4.0 PWRN2:4
4.1 PWRN2:4
5.0 PWRN2:4
5.1 PWRN2:4
5.2 PWRN2:4