Transcript: PWRN1:28

Basic information

LNCipedia transcript ID: PWRN1:28 
LNCipedia gene ID: PWRN1
Location (hg38): chr15:24570918-24587732
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4159 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023318; NONHSAT040927
Alternative gene names: XLOC_011181; linc-C15orf2-1; NCRNA00198


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6228 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PWRN1:28 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Buiting (2007), C15orf2 and a novel noncoding transcript from the Prader-Willi/Angelman syndrome region show monoallelic expression in fetal brain., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C15orf2-2:16
3.1 lnc-C15orf2-2:26
4.0 PWRN1:28
4.1 PWRN1:28
5.0 PWRN1:28
5.1 PWRN1:28
5.2 PWRN1:28