Transcript: PVT1:62

Basic information

LNCipedia transcript ID: PVT1:62 
LNCipedia gene ID: PVT1
Location (hg38): chr8:127795822-128073429
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1125 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000249859.3|HBMT00001400719.1
Alternative gene names: NCRNA00079; LINC00079; onco-lncRNA-100


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -115.733 non-coding 
CPAT coding probability 17.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PVT1:62 no no no no

Available literature

  1. Austin (2017), Transcriptional profiling identifies the long noncoding RNA plasmacytoma variant translocation (PVT1) as a novel regulator of the asthmatic phenotype in human airway smooth muscle., J. Allergy Clin. Immunol.
  2. Cui (2016), Long non-coding RNA PVT1 as a novel biomarker for diagnosis and prognosis of non-small cell lung cancer., Tumour Biol.
  3. Li (2016), Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells., Nucleic Acids Res.
  4. Zhou (2016), Long noncoding RNA PVT1 modulates thyroid cancer cell proliferation by recruiting EZH2 and regulating thyroid-stimulating hormone receptor (TSHR)., Tumour Biol.
  5. Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
  6. Colombo (2015), PVT1: a rising star among oncogenic long noncoding RNAs., Biomed Res Int
  7. Ding (2015), Long non-coding RNA PVT1 is associated with tumor progression and predicts recurrence in hepatocellular carcinoma patients., Oncol Lett
  8. Guo (2015), Competing endogenous RNA networks and gastric cancer., World J. Gastroenterol.
  9. Huang (2015), Increased expression of the lncRNA PVT1 is associated with poor prognosis in pancreatic cancer patients., Minerva Med.
  10. Kim (2015), MYC-repressed long noncoding RNAs antagonize MYC-induced cell proliferation and cell cycle progression., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PVT1:62
5.0 PVT1:62
5.1 PVT1:62
5.2 PVT1:62

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