Transcript: PTOV1-AS1:4

Basic information

LNCipedia transcript ID: PTOV1-AS1:4 
LNCipedia gene ID: PTOV1-AS1
Ensembl Gene ID: ENSG00000268006
Ensembl Transcript ID: ENST00000600742
Location (hg38): chr19:49839227-49851057
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3181 bp
Exons: 3
Sources: Biogazelle lncRNA chip; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501766; NONHSAT067253; ENST00000600742.1
Alternative gene names: ENSG00000245041; ENSG00000268006.1; PTOV1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.7699 non-coding 
CPAT coding probability 2.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTOV1-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PNKP-1:2
3.1 lnc-PNKP-1:2
4.0 PTOV1-AS1:4
4.1 PTOV1-AS1:4
5.0 PTOV1-AS1:4
5.1 PTOV1-AS1:4
5.2 PTOV1-AS1:4