Transcript: PTCSC2:4

Basic information

LNCipedia transcript ID: PTCSC2:4 
LNCipedia gene ID: PTCSC2
Location (hg38): chr9:97803164-97853112
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3212 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000109156.1|MICT00000363549.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.5143 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTCSC2:4 no no no no

Available literature

  1. He (2015), Genetic predisposition to papillary thyroid carcinoma: involvement of FOXE1, TSHR, and a novel lincRNA gene, PTCSC2., J. Clin. Endocrinol. Metab.
  2. Porcu (2013), A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PTCSC2:4
5.0 PTCSC2:4
5.1 PTCSC2:4
5.2 PTCSC2:4