Transcript: PRNCR1:1

Basic information

LNCipedia transcript ID: PRNCR1:1 
LNCipedia gene ID: PRNCR1
RefSeq ID: NR_109833
Location (hg38): chr8:127079874-127092595
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 12722 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109833; NR_109833.1
Alternative gene names: ; PRNCR1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.7546 non-coding 
CPAT coding probability 11.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRNCR1:1 no no no no

Available literature

  1. Li (2013), Association between polymorphisms in long non-coding RNA PRNCR1 in 8q24 and risk of colorectal cancer., J. Exp. Clin. Cancer Res.
  2. Yang (2013), lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs., Nature
  3. Chung (2011), Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility., Cancer Sci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POU5F1B-11:1
4.0 PRNCR1:1
4.1 PRNCR1:1
5.0 PRNCR1:1
5.1 PRNCR1:1
5.2 PRNCR1:1