Transcript: PRKCQ-AS1:56

Basic information

LNCipedia transcript ID: PRKCQ-AS1:56 
LNCipedia gene ID: PRKCQ-AS1
Location (hg38): chr10:6625941-6627035
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 231 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018111; NONHSAT011244
Alternative gene names: XLOC_008372; linc-ITIH2-8; ENST00000414894.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.1357 non-coding 
CPAT coding probability 9.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKCQ-AS1:56 no no no no

Available literature

  1. Melo (2016), Long non-coding RNAs: biomarkers for acute leukaemia subtypes., Br. J. Haematol.
  2. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  3. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL137145.1-4:1
3.1 lnc-AL137145.1-4:1
4.0 lnc-AL137145.1-3:7
4.1 PRKCQ-AS1:56
5.0 PRKCQ-AS1:56
5.1 PRKCQ-AS1:56
5.2 PRKCQ-AS1:56