Transcript: PRKCQ-AS1:13

Basic information

LNCipedia transcript ID: PRKCQ-AS1:13 
HGNC Gene Symbol: PRKCQ-AS1    
HGNC Full Gene Name: PRKCQ antisense RNA 1
Ensembl Gene ID: ENSG00000237943
Ensembl Transcript ID: ENST00000414894
Location (hg38): chr10:6583676-6585679
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 365 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017776; ENST00000414894; ENST00000414894.1; RP11-5N23.2-002; OTTHUMT00000046662.1; NONHSAT139954
Alternative gene names: XLOC_008370; linc-ITIH2-10; ENSG00000237943; RP11-5N23.2; ENSG00000237943.1; OTTHUMG00000017622.1; ENSG00000237943.2; PRKCQ-AS1; ENSG00000237943.6; ENST00000414894.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -271.7793 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKCQ-AS1:13 no no no no

Available literature

  1. Melo (2016), Long non-coding RNAs: biomarkers for acute leukaemia subtypes., Br. J. Haematol.
  2. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  3. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL137145.1-2:10
3.1 lnc-AL137145.1-2:10
4.0 PRKCQ-AS1:13
4.1 PRKCQ-AS1:13
5.0 PRKCQ-AS1:13
5.1 PRKCQ-AS1:13
5.2 PRKCQ-AS1:13