Transcript: PRKAG2-AS1:9

Basic information

LNCipedia transcript ID: PRKAG2-AS1:9 
LNCipedia gene ID: PRKAG2-AS1
Location (hg38): chr7:151877465-151879214
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1055 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00013099; ENST00000467458.1; RP11-796I2.2-002; OTTHUMT00000348439.1
Alternative gene names: XLOC_006296; linc-GALNTL5-1; ENSG00000239911.1; RP11-796I2.2; OTTHUMG00000157323.2; PRKAG2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.8275 non-coding 
CPAT coding probability 8.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKAG2-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALNTL5-1:2
3.1 lnc-GALNTL5-1:3
4.0 PRKAG2-AS1:9
4.1 PRKAG2-AS1:9
5.0 PRKAG2-AS1:9
5.1 PRKAG2-AS1:9
5.2 PRKAG2-AS1:9