Transcript: PPP1R26-AS1:3

Basic information

LNCipedia transcript ID: PPP1R26-AS1:3 
HGNC Gene Symbol: PPP1R26-AS1    
HGNC Full Gene Name: PPP1R26 antisense RNA 1
Ensembl Gene ID: ENSG00000225361
Ensembl Transcript ID: ENST00000603893
Location (hg38): chr9:135480315-135480738
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 424 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT135449; ENST00000603893.1
Alternative gene names: ENSG00000225361.3; PPP1R26-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PPP1R26-AS1:3 no no no no

Available literature

  1. Xu (2017), Oncogenic long noncoding RNA landscape in breast cancer., Mol. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf116-2:3
4.0 PPP1R26-AS1:3
4.1 PPP1R26-AS1:3
5.0 PPP1R26-AS1:3
5.1 PPP1R26-AS1:3
5.2 PPP1R26-AS1:3