Transcript: PPP1R26-AS1:18

Basic information

LNCipedia transcript ID: PPP1R26-AS1:18 
LNCipedia gene ID: PPP1R26-AS1
RefSeq ID: NR_038969
Location (hg38): chr9:135462718-135472249
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2928 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038969.1
Alternative gene names: PPP1R26-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.6676 non-coding 
CPAT coding probability 1.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PPP1R26-AS1:18 no no no no

Available literature

  1. Xu (2017), Oncogenic long noncoding RNA landscape in breast cancer., Mol. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 PPP1R26-AS1:18
5.1 PPP1R26-AS1:18
5.2 PPP1R26-AS1:18