Transcript: PPP1R26-AS1:11

Basic information

LNCipedia transcript ID: PPP1R26-AS1:11 
LNCipedia gene ID: PPP1R26-AS1
Location (hg38): chr9:135464498-135464880
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 248 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000412464; ENST00000412464.1; RP11-426A6.8-001; OTTHUMT00000054990.1; NONHSAT135444
Alternative gene names: ENSG00000230200; RP11-426A6.8; ENSG00000230200.1; OTTHUMG00000020906.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PPP1R26-AS1:11 no no no no

Available literature

  1. Xu (2017), Oncogenic long noncoding RNA landscape in breast cancer., Mol. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf116-1:1
3.1 lnc-C9orf116-2:1
4.0 PPP1R26-AS1:11
4.1 PPP1R26-AS1:11
5.0 PPP1R26-AS1:11
5.1 PPP1R26-AS1:11
5.2 PPP1R26-AS1:11