Transcript: POT1-AS1:6

Basic information

LNCipedia transcript ID: POT1-AS1:6 
HGNC Gene Symbol: POT1-AS1    
HGNC Full Gene Name: POT1 antisense RNA 1
Ensembl Gene ID: ENSG00000224897
Ensembl Transcript ID: ENST00000449642
Location (hg38): chr7:124929915-125145234
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3238 bp
Exons: 8
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449642; ENST00000449642.1; RP11-3B12.1-005; OTTHUMT00000347739.1; NONHSAT123091; ENST00000449642.5
Alternative gene names: ENSG00000224897; RP11-3B12.1; ENSG00000224897.2; OTTHUMG00000157170.1; POT1-AS1; ENSG00000224897.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.9155 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
POT1-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPAM1-4:3
3.1 lnc-SPAM1-4:3
4.0 POT1-AS1:6
4.1 POT1-AS1:6
5.0 POT1-AS1:6
5.1 POT1-AS1:6
5.2 POT1-AS1:6