Transcript: POC1B-AS1:43

Basic information

LNCipedia transcript ID: POC1B-AS1:43 
LNCipedia gene ID: POC1B-AS1
Location (hg38): chr12:89561129-89594021
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 854 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000552778.1; RP11-981P6.1-001; OTTHUMT00000406651.1; NONHSAT029822
Alternative gene names: ENSG00000258302.1; RP11-981P6.1; OTTHUMG00000169945.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.0355 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
POC1B-AS1:43 yes no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMTC3-3:1
4.0 lnc-TMTC3-3:1
4.1 lnc-TMTC3-14:26
5.0 lnc-TMTC3-14:26
5.1 POC1B-AS1:27
5.2 POC1B-AS1:43