Transcript: PLUT:8

Basic information

LNCipedia transcript ID: PLUT:8 
LNCipedia gene ID: PLUT
RefSeq ID: NR_047484
Location (hg38): chr13:27829759-27921404
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2002 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_047484; NR_047484.1
Alternative gene names: ; PDX1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.2203 non-coding 
CPAT coding probability 12.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PLUT:8 yes no no no

Available literature

  1. Akerman (2017), Human Pancreatic β Cell lncRNAs Control Cell-Specific Regulatory Networks., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDX2-2:2
4.0 PDX1-AS1:3
4.1 PDX1-AS1:3
5.0 PDX1-AS1:3
5.1 PLUT:4
5.2 PLUT:8