Transcript: PLS3-AS1:4

Basic information

LNCipedia transcript ID: PLS3-AS1:4 
HGNC Gene Symbol: PLS3-AS1    
HGNC Full Gene Name: PLS3 antisense RNA 1
Ensembl Gene ID: ENSG00000271826
Ensembl Transcript ID: ENST00000606397
Location (hg38): chrX:115520484-115562707
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 521 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606397.1
Alternative gene names: ENSG00000271826.1; RP1-93I3.1; ENSG00000271826.5; PLS3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.8309 non-coding 
CPAT coding probability 7.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PLS3-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP1-241P17.4.1-4:4
4.0 PLS3-AS1:4
4.1 PLS3-AS1:4
5.0 PLS3-AS1:4
5.1 PLS3-AS1:4
5.2 PLS3-AS1:4