Transcript: PLS3-AS1:3

Basic information

LNCipedia transcript ID: PLS3-AS1:3 
HGNC Gene Symbol: PLS3-AS1    
HGNC Full Gene Name: PLS3 antisense RNA 1
Ensembl Gene ID: ENSG00000271826
Ensembl Transcript ID: ENST00000607680
Location (hg38): chrX:115518182-115562731
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1763 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607680.1; ENST00000607680.5
Alternative gene names: ENSG00000271826.1; RP1-93I3.1; ENSG00000271826.5; PLS3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.9936 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PLS3-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP1-241P17.4.1-4:2
4.0 PLS3-AS1:3
4.1 PLS3-AS1:3
5.0 PLS3-AS1:3
5.1 PLS3-AS1:3
5.2 PLS3-AS1:3