Transcript: PISRT1:3

Basic information

LNCipedia transcript ID: PISRT1:3 
HGNC Gene Symbol: PISRT1    
HGNC Full Gene Name: PISRT1 lncRNA
Ensembl Gene ID: ENSG00000281473
Ensembl Transcript ID: ENST00000626175
Location (hg38): chr3:139232992-139233522
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 531 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626175.1
Alternative gene names: ENSG00000281473.1; PISRT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -251.7899 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PISRT1:3 yes no no no

Available literature

  1. González-González (2012), Microdeletion found by array-CGH in girl with blepharophimosis syndrome and apparently balanced translocation t(3;15)(q23;q25)., Ophthalmic Genet.
  2. Loffler (2005), Pisrt1, a gene implicated in XX sex reversal, is expressed in gonads of both sexes during mouse development., Mol. Genet. Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C3orf72-9:1
4.1 lnc-C3orf72-9:1
5.0 lnc-C3orf72-9:1
5.1 PISRT1:2
5.2 PISRT1:3