Transcript: PICSAR:4

Basic information

LNCipedia transcript ID: PICSAR:4 
LNCipedia gene ID: PICSAR
Location (hg38): chr21:44999447-45000417
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 237 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029315; NONHSAT082909
Alternative gene names: XLOC_014121; linc-ITGB2-3; PRED74; NLC1-C


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PICSAR:4 no no no no

Available literature

  1. Piipponen (2016), Long Noncoding RNA PICSAR Promotes Growth of Cutaneous Squamous Cell Carcinoma by Regulating ERK1/2 Activity., J. Invest. Dermatol.
  2. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  3. Mills (2013), Unique transcriptome patterns of the white and grey matter corroborate structural and functional heterogeneity in the human frontal lobe., PLoS ONE
  4. Kawashima (2006), Genomewide association analysis of human narcolepsy and a new resistance gene., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf67-3:3
3.1 lnc-C21orf67-4:3
4.0 PICSAR:4
4.1 PICSAR:4
5.0 PICSAR:4
5.1 PICSAR:4
5.2 PICSAR:4