Transcript: PGR-AS1:9

Basic information

LNCipedia transcript ID: PGR-AS1:9 
HGNC Gene Symbol: PGR-AS1    
HGNC Full Gene Name: PGR antisense RNA 1
Ensembl Gene ID: ENSG00000282728
Ensembl Transcript ID: ENST00000531772
Location (hg38): chr11:101148150-101209591
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT023852; FPKM1_group_5210_transcript_1; ENST00000531772.1
Alternative gene names: ENSG00000282728.1; RP11-788M5.4; PGR-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.735 non-coding 
CPAT coding probability 5.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGR-AS1:9 no no no no

Available literature

  1. Schwartz (2008), Antisense transcripts are targets for activating small RNAs., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM133-3:3
4.0 lnc-TMEM133-3:3
4.1 lnc-TMEM133-3:3
5.0 lnc-TMEM133-3:3
5.1 PGR-AS1:5
5.2 PGR-AS1:9