Transcript: PGR-AS1:7

Basic information

LNCipedia transcript ID: PGR-AS1:7 
LNCipedia gene ID: PGR-AS1
RefSeq ID: NR_073144
Location (hg38): chr11:101129077-101159270
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1223 bp
Exons: 5
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT023850; NR_073144; NR_073144.1
Alternative gene names: LOC101054525


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.1359 non-coding 
CPAT coding probability 11.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGR-AS1:7 no no no no

Available literature

  1. Schwartz (2008), Antisense transcripts are targets for activating small RNAs., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM133-3:1
4.0 lnc-TMEM133-3:1
4.1 lnc-TMEM133-3:1
5.0 lnc-TMEM133-3:1
5.1 PGR-AS1:3
5.2 PGR-AS1:7