Transcript: PGM5P4-AS1:6

Basic information

LNCipedia transcript ID: PGM5P4-AS1:6 
LNCipedia gene ID: PGM5P4-AS1
Location (hg38): chr2:113540056-113542665
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 590 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000433106; ENST00000433106.2; AL078621.4-001; OTTHUMT00000109023.2; NONHSAT073793
Alternative gene names: ENSG00000231943; AL078621.4; ENSG00000231943.2; OTTHUMG00000047818.3; FAM233C


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.0932 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGM5P4-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC016745.1-1:2
3.1 lnc-AC016745.1-1:3
4.0 PGM5P4-AS1:6
4.1 PGM5P4-AS1:6
5.0 PGM5P4-AS1:6
5.1 PGM5P4-AS1:6
5.2 PGM5P4-AS1:6