Transcript: PGM5P3-AS1:2

Basic information

LNCipedia transcript ID: PGM5P3-AS1:2 
HGNC Gene Symbol: PGM5P3-AS1    
HGNC Full Gene Name: PGM5P3 antisense RNA 1
Ensembl Gene ID: ENSG00000277631
Ensembl Transcript ID: ENST00000620326
Location (hg38): chr9:72675-75293
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 554 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620326.1
Alternative gene names: ENSG00000277631.4; PGM5P3-AS1; FAM233B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -45.6096 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGM5P3-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PGM5P3-AS1:2
4.1 PGM5P3-AS1:2
5.0 PGM5P3-AS1:2
5.1 PGM5P3-AS1:2
5.2 PGM5P3-AS1:2