Transcript: PDZRN3-AS1:5

Basic information

LNCipedia transcript ID: PDZRN3-AS1:5 
HGNC Gene Symbol: PDZRN3-AS1    
HGNC Full Gene Name: PDZRN3 antisense RNA 1
Ensembl Gene ID: ENSG00000239677
Ensembl Transcript ID: ENST00000619517
Location (hg38): chr3:73623628-73626570
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 613 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619517.4
Alternative gene names: ENSG00000239677.6; PDZRN3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -155.2818 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PDZRN3-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PDZRN3-AS1:5
4.1 PDZRN3-AS1:5
5.0 PDZRN3-AS1:5
5.1 PDZRN3-AS1:5
5.2 PDZRN3-AS1:5