Transcript: PDZRN3-AS1:3

Basic information

LNCipedia transcript ID: PDZRN3-AS1:3 
HGNC Gene Symbol: PDZRN3-AS1    
HGNC Full Gene Name: PDZRN3 antisense RNA 1
Ensembl Gene ID: ENSG00000239677
Ensembl Transcript ID: ENST00000608743
Location (hg38): chr3:73623568-73625921
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 780 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608743.1; ENST00000608743.5
Alternative gene names: ENSG00000239677.2; PDZRN3-AS1; ENSG00000239677.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.2108 non-coding 
CPAT coding probability 1.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PDZRN3-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP4R2-1:3
4.0 PDZRN3-AS1:3
4.1 PDZRN3-AS1:3
5.0 PDZRN3-AS1:3
5.1 PDZRN3-AS1:3
5.2 PDZRN3-AS1:3