Transcript: PCOLCE-AS1:3

Basic information

LNCipedia transcript ID: PCOLCE-AS1:3 
LNCipedia gene ID: PCOLCE-AS1
RefSeq ID: NR_038910
Location (hg38): chr7:100589401-100604038
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2538 bp
Exons: 9
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT122390; NR_038910; NR_038910.1
Alternative gene names: ; PCOLCE-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 140.099 coding 
CPAT coding probability 99.17% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PCOLCE-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRCH4-1:4
4.0 PCOLCE-AS1:3
4.1 PCOLCE-AS1:3
5.0 PCOLCE-AS1:3
5.1 PCOLCE-AS1:3
5.2 PCOLCE-AS1:3