Transcript: PCF11-AS1:1

Basic information

LNCipedia transcript ID: PCF11-AS1:1 
LNCipedia gene ID: PCF11-AS1
Location (hg38): chr11:83185795-83194248
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7804 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT023390
Alternative gene names: ENST00000602322.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
QPNGGLHK 100% antisense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.0785 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PCF11-AS1:1 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC90B-2:8
4.0 PCF11-AS1:1
4.1 PCF11-AS1:1
5.0 PCF11-AS1:1
5.1 PCF11-AS1:1
5.2 PCF11-AS1:1