Transcript: PCDH9-AS2:1

Basic information

LNCipedia transcript ID: PCDH9-AS2:1 
HGNC Gene Symbol: PCDH9-AS2    
HGNC Full Gene Name: PCDH9 antisense RNA 2
Ensembl Gene ID: ENSG00000228842
Ensembl Transcript ID: ENST00000419371
RefSeq ID: NR_046527
Location (hg38): chr13:66825169-66915031
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 538 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT034212; NR_046527; ENST00000419371.2; NR_046527.1
Alternative gene names: ENSG00000228842.2; PCDH9-AS2; ENSG00000228842.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -268.0249 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCDH9-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL445989.1-14:2
4.0 PCDH9-AS2:1
4.1 PCDH9-AS2:1
5.0 PCDH9-AS2:1
5.1 PCDH9-AS2:1
5.2 PCDH9-AS2:1