Transcript: PCCA-AS1:5

Basic information

LNCipedia transcript ID: PCCA-AS1:5 
HGNC Gene Symbol: PCCA-AS1    
HGNC Full Gene Name: PCCA antisense RNA 1
Ensembl Gene ID: ENSG00000234650
Ensembl Transcript ID: ENST00000451662
Location (hg38): chr13:100464440-100480285
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 474 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451662.1; PCCA-AS1-001; OTTHUMT00000045635.1; NONHSAT034961
Alternative gene names: ENSG00000234650.1; PCCA-AS1; OTTHUMG00000017286.1; ENSG00000234650.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.5176 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCCA-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-A2LD1-1:3
4.0 PCCA-AS1:5
4.1 PCCA-AS1:5
5.0 PCCA-AS1:5
5.1 PCCA-AS1:5
5.2 PCCA-AS1:5