Transcript: PAXIP1-AS1:7

Basic information

LNCipedia transcript ID: PAXIP1-AS1:7 
LNCipedia gene ID: PAXIP1-AS1
Ensembl Gene ID: ENSG00000273344
Ensembl Transcript ID: ENST00000608317
Location (hg38): chr7:155003448-155005703
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2256 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608317.1
Alternative gene names: ENSG00000273344.1; PAXIP1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.5369 non-coding 
CPAT coding probability 16.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAXIP1-AS1:7 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC093726.6.1-1:11
4.0 PAXIP1-AS1:7
4.1 PAXIP1-AS1:7
5.0 PAXIP1-AS1:7
5.1 PAXIP1-AS1:7
5.2 PAXIP1-AS1:7