Transcript: PAX8-AS1:3

Basic information

LNCipedia transcript ID: PAX8-AS1:3 
LNCipedia gene ID: PAX8-AS1
Location (hg38): chr2:113234541-113263362
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 529 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000553869; ENST00000553869.1; AC016683.6-013; OTTHUMT00000411447.1; NONHSAT073759
Alternative gene names: ENSG00000189223; AC016683.6; ENSG00000189223.7; OTTHUMG00000153340.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.0113 non-coding 
CPAT coding probability 22.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAX8-AS1:3 yes no no no

Available literature

  1. Yu (2018), Baicalein inhibits breast cancer growth via activating a novel isoform of the long noncoding RNA PAX8-AS1-N., J. Cell. Biochem.
  2. Han (2016), Expression quantitative trait loci in long non-coding RNA PAX8-AS1 are associated with decreased risk of cervical cancer., Mol. Genet. Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSD4-1:3
3.1 lnc-PSD4-1:2
4.0 PAX8-AS1:3
4.1 PAX8-AS1:3
5.0 PAX8-AS1:3
5.1 PAX8-AS1:3
5.2 PAX8-AS1:3