Transcript: PAX8-AS1:28

Basic information

LNCipedia transcript ID: PAX8-AS1:28 
LNCipedia gene ID: PAX8-AS1
Location (hg38): chr2:113240730-113241410
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 582 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000553319; ENST00000553319.1; RP11-65I12.1-001; OTTHUMT00000411450.1; NONHSAT073771
Alternative gene names: ENSG00000258395; RP11-65I12.1; ENSG00000258395.1; OTTHUMG00000171056.1;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.1243 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAX8-AS1:28 yes no no no

Available literature

  1. Yu (2018), Baicalein inhibits breast cancer growth via activating a novel isoform of the long noncoding RNA PAX8-AS1-N., J. Cell. Biochem.
  2. Han (2016), Expression quantitative trait loci in long non-coding RNA PAX8-AS1 are associated with decreased risk of cervical cancer., Mol. Genet. Genomics

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSD4-1:14
3.1 lnc-PSD4-1:14
4.0 PAX8-AS1:28
4.1 PAX8-AS1:28
5.0 PAX8-AS1:28
5.1 PAX8-AS1:28
5.2 PAX8-AS1:28