Transcript: PAX8-AS1:26

Basic information

LNCipedia transcript ID: PAX8-AS1:26 
HGNC Gene Symbol: PAX8-AS1    
HGNC Full Gene Name: PAX8 antisense RNA 1
Ensembl Gene ID: ENSG00000189223
Ensembl Transcript ID: ENST00000613966
Location (hg38): chr2:113237595-113240825
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3231 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613966.1
Alternative gene names: ENSG00000274877.1; RP11-65I12.1; ; ENSG00000189223.14; PAX8-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -39.2955 non-coding 
CPAT coding probability 3.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAX8-AS1:26 yes no no no

Available literature

  1. Yu (2018), Baicalein inhibits breast cancer growth via activating a novel isoform of the long noncoding RNA PAX8-AS1-N., J. Cell. Biochem.
  2. Han (2016), Expression quantitative trait loci in long non-coding RNA PAX8-AS1 are associated with decreased risk of cervical cancer., Mol. Genet. Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PAX8-AS1:26
4.1 PAX8-AS1:26
5.0 PAX8-AS1:26
5.1 PAX8-AS1:26
5.2 PAX8-AS1:26